Titel
A Deficiency-Based Approach to Parametrizing Positive Equilibria of Biochemical Reaction Systems
Autor*in
Matthew D. Johnston
Department of Mathematics, San José State University
Autor*in
Casian Pantea
Department of Mathematics, West Virginia University
Abstract
We present conditions which guarantee a parametrization of the set of positive equilibria of a generalized mass-action system. Our main results state that (1) if the underlying generalized chemical reaction network has an effective deficiency of zero, then the set of positive equilibria coincides with the parametrized set of complex-balanced equilibria and (2) if the network is weakly reversible and has a kinetic deficiency of zero, then the equilibrium set is nonempty and has a positive, typically rational, parametrization. Via the method of network translation, we apply our results to classical mass-action systems studied in the biochemical literature, including the EnvZ–OmpR and shuttled WNT signaling pathways. A parametrization of the set of positive equilibria of a (generalized) mass-action system is often a prerequisite for the study of multistationarity and allows an easy check for the occurrence of absolute concentration robustness, as we demonstrate for the EnvZ–OmpR pathway.
Stichwort
Chemical reaction networkChemical kineticsDeficiencyEquilibriumAlgebraic variety
Objekt-Typ
Sprache
Englisch [eng]
Persistent identifier
https://phaidra.univie.ac.at/o:953689
Erschienen in
Titel
Bulletin of Mathematical Biology
Band
81
Ausgabe
4
Seitenanfang
1143
Seitenende
1172
Verlag
Springer Nature
Erscheinungsdatum
2018
Zugänglichkeit
Rechteangabe
© The Author(s) 2018

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