Titel
Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47
Autor*in
Drazenka Selesi
Helmholtz Zentrum München - Deutsches Forschungszentrum für Gesundheit und Umwelt
Autor*in
Nico Jehmlich
Institut für Grundwasserökologie
Autor*in
Martin von Bergen
Helmholtz Zentrum für Umweltforschung - UFZ
... show all
Abstract
The highly enriched deltaproteobacterial culture N47 anaerobically oxidizes the polycyclic aromatic hydrocarbons naphthalene and 2-methylnaphthalene with sulfate as electron acceptor. Combined genome sequencing and LC-MS/MS-based shotgun proteome analysis were performed to identify genes and proteins involved in anaerobic aromatic catabolism. Proteome analysis from 2-methylnaphthalene-grown N47 cells resulted in the identification of putative enzymes catalyzing the anaerobic conversion of 2-methylnaphthalene to 2-naphthoyl-CoA as well as the reductive ring cleavage of 2-naphthoyl-CoA leading to the formation of acetyl-CoA and CO2. The glycyl radical-catalyzed fumarate addition to the methyl group of 2-methylnaphthalene is catalyzed by naphthyl-2-methyl-succinate synthase (Nms) composed of -subunits that are encoded by the genes nmsABC. Upstream of nmsABC, nmsD is located encoding the Nms-activating enzyme which harbors the characteristic [Fe4S4] cluster sequence motifs of S-adenosylmethionine (SAM)-radical enzymes. The bns gene cluster, coding for enzymes involved in beta-oxidation reactions of naphthyl-2-methyl-succinate to 2-naphthoyl-CoA, was found four intervening open reading frames further downstream. It consists of eight genes (bnsABCDEFGH) corresponding to 8.1 kb, which are closely related to enzymes involved in anaerobic toluene degradation within the denitrifiers Aromatoleum aromaticum EbN1, Azoarcus sp. T, and Thauera aromatica. Another contiguous DNA sequence harbors the gene for 2-naphthoyl-CoA reductase (ncr) and 16 additional genes that were found to be expressed in 2-methylnaphthalene-grown cells. These genes code for enzymes that were correlated to catalyze the dearomatization and ring cleavage reactions of 2-naphthoyl-CoA to acetyl-CoA and CO2. Comparative sequence analysis of the four encoding subunits (ncrABCD) showed the closest similarity to Azoarcus type of benzoyl-CoA reductase. The present work provides first insight into the genetic basis of anaerobic 2-methylnaphthalene metabolism and delivers implications for understanding contaminant degradation.
Objekt-Typ
Sprache
Englisch [eng]
Persistent identifier
https://phaidra.univie.ac.at/o:244815
Erschienen in
Titel
Journal of Bacteriology
Band
192
Ausgabe
1
Seitenanfang
295
Seitenende
306
Erscheinungsdatum
01.01.2010
Universität Wien | Universitätsring 1 | 1010 Wien | T +43-1-4277-0